While Alive estimands for Recurrent Events

While Alive estimands for Recurrent Events

We consider two while-alive estimands for recurrent events data and the mean of the subject specific events per time-unit for two treatment-groups in the case of an RCT. For the laste mean of events per time-unit it has been seen that when the sample size is to great it can improve the finite sample properties to employ a transformation such as or cube-root, and thus consider

data(hfaction_cpx12)

dtable(hfaction_cpx12,~status)
#> 
#> status
#>    0    1    2 
#>  617 1391  124
dd <- WA_recurrent(Event(entry,time,status)~treatment+cluster(id),hfaction_cpx12,time=2,death.code=2)
summary(dd)
#> While-Alive summaries:  
#> 
#> RMST,  E(min(D,t)) 
#>            Estimate Std.Err  2.5% 97.5% P-value
#> treatment0    1.859 0.02108 1.817 1.900       0
#> treatment1    1.924 0.01502 1.894 1.953       0
#>  
#>                           Estimate Std.Err    2.5%    97.5% P-value
#> [treatment0] - [treat.... -0.06517 0.02588 -0.1159 -0.01444  0.0118
#> 
#>  Null Hypothesis: 
#>   [treatment0] - [treatment1] = 0 
#> mean events, E(N(min(D,t))): 
#>            Estimate Std.Err  2.5% 97.5%   P-value
#> treatment0    1.572 0.09573 1.384 1.759 1.375e-60
#> treatment1    1.453 0.10315 1.251 1.656 4.376e-45
#>  
#>                           Estimate Std.Err    2.5%  97.5% P-value
#> [treatment0] - [treat....   0.1185  0.1407 -0.1574 0.3943     0.4
#> 
#>  Null Hypothesis: 
#>   [treatment0] - [treatment1] = 0 
#> _______________________________________________________ 
#> Ratio of means E(N(min(D,t)))/E(min(D,t)) 
#>            Estimate Std.Err   2.5%  97.5%   P-value
#> treatment0   0.8457 0.05264 0.7425 0.9488 4.411e-58
#> treatment1   0.7555 0.05433 0.6490 0.8619 5.963e-44
#>  
#>                           Estimate Std.Err     2.5%  97.5% P-value
#> [treatment0] - [treat....  0.09022 0.07565 -0.05805 0.2385   0.233
#> 
#>  Null Hypothesis: 
#>   [treatment0] - [treatment1] = 0 
#> _______________________________________________________ 
#> Mean of Events per time-unit E(N(min(D,t))/min(D,t)) 
#>        Estimate Std.Err   2.5%  97.5%   P-value
#> treat0   1.0725  0.1222 0.8331 1.3119 1.645e-18
#> treat1   0.7552  0.0643 0.6291 0.8812 7.508e-32
#>  
#>                     Estimate Std.Err    2.5%  97.5% P-value
#> [treat0] - [treat1]   0.3173  0.1381 0.04675 0.5879 0.02153
#> 
#>  Null Hypothesis: 
#>   [treat0] - [treat1] = 0

dd <- WA_recurrent(Event(entry,time,status)~treatment+cluster(id),hfaction_cpx12,time=2,death.code=2,trans=.333)
summary(dd,type="log")
#> While-Alive summaries, log-scale:  
#> 
#> RMST,  E(min(D,t)) 
#>            Estimate  Std.Err   2.5%  97.5% P-value
#> treatment0   0.6199 0.011340 0.5977 0.6421       0
#> treatment1   0.6543 0.007807 0.6390 0.6696       0
#>  
#>                           Estimate Std.Err     2.5%     97.5% P-value
#> [treatment0] - [treat.... -0.03446 0.01377 -0.06145 -0.007478 0.01231
#> 
#>  Null Hypothesis: 
#>   [treatment0] - [treatment1] = 0 
#> mean events, E(N(min(D,t))): 
#>            Estimate Std.Err   2.5%  97.5%   P-value
#> treatment0   0.4523 0.06090 0.3329 0.5716 1.119e-13
#> treatment1   0.3739 0.07097 0.2348 0.5130 1.376e-07
#>  
#>                           Estimate Std.Err    2.5%  97.5% P-value
#> [treatment0] - [treat....  0.07835 0.09352 -0.1049 0.2616  0.4022
#> 
#>  Null Hypothesis: 
#>   [treatment0] - [treatment1] = 0 
#> _______________________________________________________ 
#> Ratio of means E(N(min(D,t)))/E(min(D,t)) 
#>            Estimate Std.Err    2.5%    97.5%   P-value
#> treatment0  -0.1676 0.06224 -0.2896 -0.04563 7.081e-03
#> treatment1  -0.2804 0.07192 -0.4214 -0.13947 9.651e-05
#>  
#>                           Estimate Std.Err     2.5%  97.5% P-value
#> [treatment0] - [treat....   0.1128 0.09511 -0.07361 0.2992  0.2356
#> 
#>  Null Hypothesis: 
#>   [treatment0] - [treatment1] = 0 
#> _______________________________________________________ 
#> Mean of Events per time-unit E(N(min(D,t))/min(D,t)) 
#>        Estimate Std.Err    2.5%   97.5%   P-value
#> treat0  -0.3833 0.04939 -0.4801 -0.2865 8.487e-15
#> treat1  -0.5380 0.05666 -0.6491 -0.4270 2.191e-21
#>  
#>                     Estimate Std.Err     2.5%  97.5% P-value
#> [treat0] - [treat1]   0.1548 0.07517 0.007459 0.3021 0.03948
#> 
#>  Null Hypothesis: 
#>   [treat0] - [treat1] = 0

We see that the ratio of means are not very different, but that the subject specific mean of events per time-unit shows that those on the active treatment has fewer events per time-unit on average.

SessionInfo

sessionInfo()
#> R version 4.4.2 (2024-10-31)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.1 LTS
#> 
#> Matrix products: default
#> BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0
#> 
#> locale:
#>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
#>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=C              
#>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
#>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
#>  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
#> 
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#> 
#> attached base packages:
#> [1] splines   stats     graphics  grDevices utils     datasets  methods  
#> [8] base     
#> 
#> other attached packages:
#> [1] prodlim_2024.06.25 ggplot2_3.5.1      cowplot_1.1.3      mets_1.3.5        
#> [5] timereg_2.0.6      survival_3.8-3     rmarkdown_2.29    
#> 
#> loaded via a namespace (and not attached):
#>  [1] sass_0.4.9          future_1.34.0       lattice_0.22-6     
#>  [4] listenv_0.9.1       digest_0.6.37       magrittr_2.0.3     
#>  [7] evaluate_1.0.3      grid_4.4.2          mvtnorm_1.3-3      
#> [10] fastmap_1.2.0       jsonlite_1.8.9      Matrix_1.7-2       
#> [13] scales_1.3.0        isoband_0.2.7       codetools_0.2-20   
#> [16] numDeriv_2016.8-1.1 jquerylib_0.1.4     lava_1.8.1         
#> [19] cli_3.6.3           rlang_1.1.5         parallelly_1.41.0  
#> [22] future.apply_1.11.3 munsell_0.5.1       withr_3.0.2        
#> [25] cachem_1.1.0        yaml_2.3.10         tools_4.4.2        
#> [28] parallel_4.4.2      ucminf_1.2.2        colorspace_2.1-1   
#> [31] globals_0.16.3      buildtools_1.0.0    vctrs_0.6.5        
#> [34] R6_2.5.1            lifecycle_1.0.4     MASS_7.3-64        
#> [37] pkgconfig_2.0.3     bslib_0.8.0         pillar_1.10.1      
#> [40] gtable_0.3.6        data.table_1.16.4   glue_1.8.0         
#> [43] Rcpp_1.0.14         xfun_0.50           tibble_3.2.1       
#> [46] sys_3.4.3           knitr_1.49          farver_2.1.2       
#> [49] htmltools_0.5.8.1   labeling_0.4.3      maketools_1.3.1    
#> [52] compiler_4.4.2